If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ), 'gf_id' => 'HOM05D000711', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000711' ), 'data_identifier' => 'HOM05D000711', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000711', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '809', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02480' => 'bna', 'A01p23670' => 'bna', 'A02p01470' => 'bna', 'A02p19990' => 'bna', 'A02p31080' => 'bna', 'A03p64150' => 'bna', 'A04p16120' => 'bna', 'A05p15040' => 'bna', 'A06p15910' => 'bna', 'A07p02560' => 'bna', 'A07p17610' => 'bna', 'A07p28780' => 'bna', 'A07p41060' => 'bna', 'A09p33420' => 'bna', 'A09p44150' => 'bna', 'A09p47390' => 'bna', 'A10p25490' => 'bna', 'Aa31LG1G14880' => 'aar', 'Aa31LG3G14900' => 'aar', 'Aa31LG4G19170' => 'aar', 'Aa31LG4G5760' => 'aar', 'Aa31LG6G11290' => 'aar', 'Aa31LG6G11300' => 'aar', 'Aa31LG6G13150' => 'aar', 'Aa31LG7G15100' => 'aar', 'Aa31LG7G15110' => 'aar', 'Aa31LG7G4320' => 'aar', 'Aa31LG8G15300' => 'aar', 'Actinidia00562' => 'ach', 'Actinidia06959' => 'ach', 'Actinidia11743' => 'ach', 'Actinidia15382' => 'ach', 'Actinidia16377' => 'ach', 'Actinidia19231' => 'ach', 'Actinidia22499' => 'ach', 'Actinidia26086' => 'ach', 'Actinidia26109' => 'ach', 'Actinidia29800' => 'ach', 'Actinidia37982' => 'ach', 'Ah.03g141440' => 'amhyb', 'Ah.05g172030' => 'amhyb', 'Ah.06g194520' => 'amhyb', 'AL1G32500' => 'aly', 'AL2G35510' => 'aly', 'AL3G51310' => 'aly', 'AL4G10590' => 'aly', 'AL5G31480' => 'aly', 'AL5G35480' => 'aly', 'AL6G23130' => 'aly', 'AL7G14770' => 'aly', 'AL8G45180' => 'aly', 'Aqoxy2G00374' => 'aox', 'Aqoxy5G01509' => 'aox', 'Aqoxy6G02432' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RI6JJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0T4FW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2GNX2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.302E8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.856LYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AQ4A7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SWZ13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.94Z1HY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AAQ8XF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI3DJP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C1P736' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7N9UG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G43XWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1I1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU4UBU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFCC6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MM3PTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NWGY5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2BTVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6IIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8MHA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0GFR4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA3MKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T9K83P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USG1YY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY191I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y15ID5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8P1A7' => 'arhy', 'AT1G19790' => 'ath', 'AT1G75520' => 'ath', 'AT2G18120' => 'ath', 'AT2G21400' => 'ath', 'AT3G51060' => 'ath', 'AT3G54430' => 'ath', 'AT4G36260' => 'ath', 'AT5G12330' => 'ath', 'AT5G33210' => 'ath', 'AT5G66350' => 'ath', 'ATR0568G149' => 'atr', 'ATR0661G024' => 'atr', 'ATR0745G075' => 'atr', 'ATR0800G172' => 'atr', 'Atru.chr12.1332' => 'acertr', 'Atru.chr13.368' => 'acertr', 'Atru.chr3.2765' => 'acertr', 'Atru.chr3.746' => 'acertr', 'Atru.chr5.3106' => 'acertr', 'AUR62000185' => 'cqu', 'AUR62006536' => 'cqu', 'AUR62007636' => 'cqu', 'AUR62007664' => 'cqu', 'AUR62010428' => 'cqu', 'AUR62014445' => 'cqu', 'AUR62016794' => 'cqu', 'AUR62034552' => 'cqu', 'BcaB01g00193' => 'bca', 'BcaB01g00550' => 'bca', 'BcaB02g07027' => 'bca', 'BcaB02g10039' => 'bca', 'BcaB03g14377' => 'bca', 'BcaB03g14436' => 'bca', 'BcaB03g16598' => 'bca', 'BcaB05g24916' => 'bca', 'BcaB07g31993' => 'bca', 'BcaC02g08795' => 'bca', 'BcaC03g15585' => 'bca', 'BcaC06g34690' => 'bca', 'BcaC06g36371' => 'bca', 'BcaC07g39584' => 'bca', 'BcaC07g41141' => 'bca', 'BcaC07g41142' => 'bca', 'BcaC08g45570' => 'bca', 'BcaC08g46871' => 'bca', 'BcaC08g47033' => 'bca', 'BcaC08g47344' => 'bca', 'BcaC09g50064' => 'bca', 'BcaNung00400' => 'bca', 'BcaNung00743' => 'bca', 'BcaNung00744' => 'bca', 'BcaNung01196' => 'bca', 'BcaNung03012' => 'bca', 'BcaNung03624' => 'bca', 'BcaNung04785' => 'bca', 'BcaNung04786' => 'bca', 'BolC1t00258H' => 'bol', 'BolC1t02886H' => 'bol', 'BolC2t09300H' => 'bol', 'BolC4t26656H' => 'bol', 'BolC5t30529H' => 'bol', 'BolC6t38378H' => 'bol', 'BolC6t39890H' => 'bol', 'BolC6t39990H' => 'bol', 'BolC7t40880H' => 'bol', 'BolC7t41171H' => 'bol', 'BolC7t42907H' => 'bol', 'BolC7t43077H' => 'bol', 'BolC7t46585H' => 'bol', 'BolC8t50254H' => 'bol', 'BolC8t50568H' => 'bol', 'BolC8t50571H' => 'bol', 'BolC8t50574H' => 'bol', 'BolC8t51718H' => 'bol', 'BolC9t59290H' => 'bol', 'BraA01t00235Z' => 'bra', 'BraA01t02278Z' => 'bra', 'BraA02t05126Z' => 'bra', 'BraA02t07038Z' => 'bra', 'BraA03t15482Z' => 'bra', 'BraA04t16240Z' => 'bra', 'BraA04t17252Z' => 'bra', 'BraA06t24702Z' => 'bra', 'BraA07t28055Z' => 'bra', 'BraA07t29480Z' => 'bra', 'BraA07t30519Z' => 'bra', 'BraA07t31643Z' => 'bra', 'BraA09t39876Z' => 'bra', 'BraA09t40199Z' => 'bra', 'BraA09t41215Z' => 'bra', 'BraA10t44613Z' => 'bra', 'C01p02680' => 'bna', 'C01p29440' => 'bna', 'C02p05690' => 'bna', 'C02p32690' => 'bna', 'C04p50580' => 'bna', 'C05p18220' => 'bna', 'C06p32550' => 'bna', 'C06p49510' => 'bna', 'C07p04810' => 'bna', 'C07p07530' => 'bna', 'C07p23850' => 'bna', 'C07p25570' => 'bna', 'C07p61620' => 'bna', 'C08p26370' => 'bna', 'C08p29650' => 'bna', 'C09p64570' => 'bna', 'CAN.G1.59' => 'can', 'CAN.G170.82' => 'can', 'CAN.G358.17' => 'can', 'CAN.G408.8' => 'can', 'CAN.G785.17' => 'can', 'CAN.G851.21' => 'can', 'CAN.G96.12' => 'can', 'CANSAT01G0495' => 'cansat', 'CANSAT21G1437' => 'cansat', 'CANSAT25G3003' => 'cansat', 'CARHR020300' => 'chi', 'CARHR068920' => 'chi', 'CARHR108610' => 'chi', 'CARHR112300' => 'chi', 'CARHR160640' => 'chi', 'CARHR164330' => 'chi', 'CARHR200780' => 'chi', 'CARHR244660' => 'chi', 'CARHR281360' => 'chi', 'Carub.0001s1932' => 'cru', 'Carub.0002s2238' => 'cru', 'Carub.0003s3226' => 'cru', 'Carub.0004s0045' => 'cru', 'Carub.0005s1746' => 'cru', 'Carub.0005s2103' => 'cru', 'Carub.0006s1084' => 'cru', 'Carub.0007s0398' => 'cru', 'Carub.0008s2816' => 'cru', 'Ca_02064_v3' => 'car', 'Ca_06216_v3' => 'car', 'Ca_12978_v3' => 'car', 'Ca_13390_v3' => 'car', 'Ca_23238_v3' => 'car', 'Ca_23961_v3' => 'car', 'Ca_24881_v3' => 'car', 'CBR_g40319' => 'cbr', 'Cc02_g17110' => 'ccan', 'Cc07_g10250' => 'ccan', 'Cc10_g02200' => 'ccan', 'CDE02G0714' => 'cde', 'CDE04G1700' => 'cde', 'CDE04G3133' => 'cde', 'CDE05G1797' => 'cde', 'CDE07G1708' => 'cde', 'CDE09G0087' => 'cde', 'CDE11G0414' => 'cde', 'CDE12G0691' => 'cde', 'Cfa005071' => 'cfa', 'Cfa006925' => 'cfa', 'Cfa013898' => 'cfa', 'Ciclev10001824m.g' => 'ccl', 'Ciclev10002739m.g' => 'ccl', 'Ciclev10015674m.g' => 'ccl', 'Ciclev10025993m.g' => 'ccl', 'Ciclev10029805m.g' => 'ccl', 'CiPaw.05G071500' => 'cil', 'CiPaw.06G131200' => 'cil', 'CiPaw.07G054700' => 'cil', 'CiPaw.07G154800' => 'cil', 'CiPaw.08G062200' => 'cil', 'CiPaw.08G136600' => 'cil', 'CiPaw.13G013900' => 'cil', 'CiPaw.13G151400' => 'cil', 'CiPaw.14G007700' => 'cil', 'CiPaw.14G113700' => 'cil', 'ClCG01G020040' => 'cla', 'ClCG02G022900' => 'cla', 'ClCG03G012640' => 'cla', 'ClCG05G018620' => 'cla', 'ClCG05G026830' => 'cla', 'ClCG07G008820' => 'cla', 'ClCG08G014580' => 'cla', 'ClCG09G013590' => 'cla', 'COL.COLO4_20661' => 'col', 'COL.COLO4_21983' => 'col', 'COL.COLO4_26010' => 'col', 'COL.COLO4_26213' => 'col', 'COL.COLO4_35679' => 'col', 'Cpa.g.sc140.14' => 'cpa', 'Cpa.g.sc150.46' => 'cpa', 'Cpa.g.sc169.52' => 'cpa', 'Cpa.g.sc482.2' => 'cpa', 'Cpa.g.sc6.196' => 'cpa', 'CsaV3_1G043360' => 'csa', 'CsaV3_2G029220' => 'csa', 'CsaV3_3G045570' => 'csa', 'CsaV3_4G005360' => 'csa', 'CsaV3_5G036780' => 'csa', 'CsaV3_6G039030' => 'csa', 'CsaV3_6G046800' => 'csa', 'CsaV3_7G006060' => 'csa', 'CSS0013588' => 'camsi', 'CSS0015926' => 'camsi', 'CSS0017906' => 'camsi', 'CSS0018010' => 'camsi', 'CSS0038466' => 'camsi', 'CSS0039455' => 'camsi', 'CSS0041868' => 'camsi', 'DCAR_002108' => 'dca', 'DCAR_003652' => 'dca', 'DCAR_009951' => 'dca', 'DCAR_013845' => 'dca', 'DCAR_017328' => 'dca', 'DCAR_017509' => 'dca', 'DCAR_022448' => 'dca', 'DCAR_023034' => 'dca', 'DCAR_025983' => 'dca', 'Dinv15068' => 'din', 'Dinv23477' => 'din', 'Dinv31805' => 'din', 'Dinv33587' => 'din', 'Dinv36173' => 'din', 'Dinv38627' => 'din', 'Dinv39479' => 'din', 'Dinv40041' => 'din', 'Dinv42019' => 'din', 'Duzib041G0759' => 'dzi', 'Duzib052G0521' => 'dzi', 'Duzib093G0081' => 'dzi', 'Duzib114G0738' => 'dzi', 'Duzib116G0506' => 'dzi', 'Duzib147G1092' => 'dzi', 'Duzib150G1376' => 'dzi', 'Duzib170G0005' => 'dzi', 'Duzib187G0635' => 'dzi', 'Duzib248G0091' => 'dzi', 'Duzib264G1253' => 'dzi', 'ECA232G2385' => 'eca', 'ECA232G4901' => 'eca', 'ECA238G1262' => 'eca', 'ECA240G1698' => 'eca', 'ECA246G2950' => 'eca', 'ECA247G3241' => 'eca', 'EL10Ac1g00566' => 'bvu', 'EL10Ac4g10149' => 'bvu', 'EL10Ac9g21674' => 'bvu', 'EL10As8g23869' => 'bvu', 'Eucgr.F01614' => 'egr', 'Eucgr.I01308' => 'egr', 'Eucgr.I02379' => 'egr', 'Eucgr.I02380' => 'egr', 'Eucgr.J00697' => 'egr', 'Eucgr.J02389' => 'egr', 'FAN01G1062' => 'fan', 'FAN03G3132' => 'fan', 'FAN06G3239' => 'fan', 'FAN10G3418' => 'fan', 'FAN15G0801' => 'fan', 'FAN15G2603' => 'fan', 'FAN19G0380' => 'fan', 'FAN20G2535' => 'fan', 'FAN20G3044' => 'fan', 'FAN21G3187' => 'fan', 'FAN23G0399' => 'fan', 'FAN24G0942' => 'fan', 'FAN25G1319' => 'fan', 'FAN26G1640' => 'fan', 'FAN27G2120' => 'fan', 'FAN27G2239' => 'fan', 'FAN28G1832' => 'fan', 'FvH4_1g12410' => 'fve', 'FvH4_2g10010' => 'fve', 'FvH4_2g38950' => 'fve', 'FvH4_3g27920' => 'fve', 'FvH4_7g03110' => 'fve', 'Glyma.01G170700' => 'gma', 'Glyma.02G051900' => 'gma', 'Glyma.02G280000' => 'gma', 'Glyma.04G009300' => 'gma', 'Glyma.04G027400' => 'gma', 'Glyma.04G136700' => 'gma', 'Glyma.06G009200' => 'gma', 'Glyma.06G027500' => 'gma', 'Glyma.07G230400' => 'gma', 'Glyma.11G072500' => 'gma', 'Glyma.11G113200' => 'gma', 'Glyma.11G155400' => 'gma', 'Glyma.12G039100' => 'gma', 'Glyma.13G197300' => 'gma', 'Glyma.14G034800' => 'gma', 'Glyma.14G216400' => 'gma', 'Glyma.15G235000' => 'gma', 'Glyma.16G132100' => 'gma', 'Glyma.17G255000' => 'gma', 'Glyma.20G037100' => 'gma', 'Gohir.A01G113350' => 'ghi', 'Gohir.A02G168600' => 'ghi', 'Gohir.A03G080500' => 'ghi', 'Gohir.A03G197800' => 'ghi', 'Gohir.A05G071300' => 'ghi', 'Gohir.A05G188900' => 'ghi', 'Gohir.A06G006400' => 'ghi', 'Gohir.A07G120100' => 'ghi', 'Gohir.A08G010100' => 'ghi', 'Gohir.A09G110000' => 'ghi', 'Gohir.A10G185500' => 'ghi', 'Gohir.A11G178800' => 'ghi', 'Gohir.A13G031350' => 'ghi', 'Gohir.D01G099600' => 'ghi', 'Gohir.D02G097000' => 'ghi', 'Gohir.D02G209800' => 'ghi', 'Gohir.D03G011400' => 'ghi', 'Gohir.D05G074200' => 'ghi', 'Gohir.D05G192000' => 'ghi', 'Gohir.D06G002300' => 'ghi', 'Gohir.D07G124300' => 'ghi', 'Gohir.D08G020200' => 'ghi', 'Gohir.D09G106400' => 'ghi', 'Gohir.D10G192700' => 'ghi', 'Gohir.D11G186400' => 'ghi', 'Gohir.D13G029350' => 'ghi', 'Gorai.001G134100' => 'gra', 'Gorai.002G125600' => 'gra', 'Gorai.003G011800' => 'gra', 'Gorai.004G014800' => 'gra', 'Gorai.005G110600' => 'gra', 'Gorai.005G247100' => 'gra', 'Gorai.006G123900' => 'gra', 'Gorai.007G198100' => 'gra', 'Gorai.009G075300' => 'gra', 'Gorai.009G197300' => 'gra', 'Gorai.010G006800' => 'gra', 'Gorai.011G215400' => 'gra', 'Gorai.013G033500' => 'gra', 'GSVIVG01009812001' => 'vvi', 'GSVIVG01013486001' => 'vvi', 'GSVIVG01018845001' => 'vvi', 'GSVIVG01024206001' => 'vvi', 'GSVIVG01037267001' => 'vvi', 'HanXRQChr02g0040141' => 'han', 'HanXRQChr03g0090331' => 'han', 'HanXRQChr04g0106521' => 'han', 'HanXRQChr04g0106531' => 'han', 'HanXRQChr05g0153001' => 'han', 'HanXRQChr09g0260731' => 'han', 'HanXRQChr09g0269401' => 'han', 'HanXRQChr11g0325601' => 'han', 'HanXRQChr12g0374361' => 'han', 'HanXRQChr13g0418401' => 'han', 'HanXRQChr13g0418411' => 'han', 'HanXRQChr14g0438581' => 'han', 'Haze_02311' => 'cav', 'Haze_03041' => 'cav', 'Haze_03824' => 'cav', 'Haze_22577' => 'cav', 'Haze_23223' => 'cav', 'Hma1.2p1_0066F.1_g035950' => 'hma', 'Hma1.2p1_0066F.1_g035960' => 'hma', 'Hma1.2p1_0069F.1_g037410' => 'hma', 'Hma1.2p1_0129F.1_g060135' => 'hma', 'Hma1.2p1_0773F.1_g216100' => 'hma', 'Hma1.2p1_1386F.1_g279860' => 'hma', 'Hma1.2p1_2742F.1_g327760' => 'hma', 'HPP92_007399' => 'vpl', 'HPP92_015086' => 'vpl', 'HPP92_025146' => 'vpl', 'Hund00231' => 'sun', 'Hund06264' => 'sun', 'Hund07440' => 'sun', 'Hund14018' => 'sun', 'Hund16466' => 'sun', 'Hund17210' => 'sun', 'Hund21984' => 'sun', 'Hund26875' => 'sun', 'Lalb_Chr01g0002291' => 'lal', 'Lalb_Chr03g0032631' => 'lal', 'Lalb_Chr04g0249201' => 'lal', 'Lalb_Chr09g0322101' => 'lal', 'Lalb_Chr10g0106301' => 'lal', 'Lalb_Chr11g0062101' => 'lal', 'Lalb_Chr14g0369671' => 'lal', 'Lalb_Chr16g0377691' => 'lal', 'Lalb_Chr17g0347951' => 'lal', 'Lalb_Chr22g0354481' => 'lal', 'Lalb_Chr23g0266341' => 'lal', 'Lalb_Chr24g0398801' => 'lal', 'Lj1C285T9' => 'lonja', 'Lj1g0023817' => 'lja', 'Lj2A461T35' => 'lonja', 'Lj2g0022541' => 'lja', 'Lj3g0008866' => 'lja', 'Lj3g0011841' => 'lja', 'Lj3g0013386' => 'lja', 'Lj4A30T28' => 'lonja', 'Lj4A790T64' => 'lonja', 'Lj4C212T5' => 'lonja', 'Lj4g0011139' => 'lja', 'Lj5g0027236' => 'lja', 'Lj5P192T30' => 'lonja', 'Lj6g0016073' => 'lja', 'LjContig00049g0005664' => 'lja', 'Lsat_1_v5_gn_1_16440' => 'lsa', 'Lsat_1_v5_gn_2_33180' => 'lsa', 'Lsat_1_v5_gn_3_110380' => 'lsa', 'Lsat_1_v5_gn_4_149681' => 'lsa', 'Lsat_1_v5_gn_5_120141' => 'lsa', 'Lsat_1_v5_gn_5_26401' => 'lsa', 'Manes.01G141500' => 'mes', 'Manes.01G179500' => 'mes', 'Manes.02G100100' => 'mes', 'Manes.02G140000' => 'mes', 'Manes.04G085450' => 'mes', 'Manes.04G159200' => 'mes', 'Manes.05G153200' => 'mes', 'Manes.11G087500' => 'mes', 'Manes.18G018200' => 'mes', 'Mapoly0049s0083' => 'mpo', 'MBI01_g22366_MAGBIO' => 'mbi', 'MBI13_g06295_MAGBIO' => 'mbi', 'MBI13_g24920_MAGBIO' => 'mbi', 'MBI18_g25919_MAGBIO' => 'mbi', 'MBI18_g28072_MAGBIO' => 'mbi', 'MD02G1137000' => 'mdo', 'MD02G1285800' => 'mdo', 'MD03G1166900' => 'mdo', 'MD05G1058700' => 'mdo', 'MD08G1021500' => 'mdo', 'MD10G1066400' => 'mdo', 'MD11G1186100' => 'mdo', 'MD15G1019200' => 'mdo', 'MD15G1250700' => 'mdo', 'Medtr0105s0070' => 'mtr', 'Medtr0363s0040' => 'mtr', 'Medtr1g023230' => 'mtr', 'Medtr2g012910' => 'mtr', 'Medtr3g014660' => 'mtr', 'Medtr3g112510' => 'mtr', 'Medtr4g071110' => 'mtr', 'Medtr5g021130' => 'mtr', 'Medtr5g089750' => 'mtr', 'Medtr8g039110' => 'mtr', 'Medtr8g076620' => 'mtr', 'MELO3C003781.2' => 'cme', 'MELO3C007877.2' => 'cme', 'MELO3C010984.2' => 'cme', 'MELO3C014564.2' => 'cme', 'MELO3C015123.2' => 'cme', 'MELO3C018686.2' => 'cme', 'MELO3C027042.2' => 'cme', 'MELO3C031083.2' => 'cme', 'Migut.B00196' => 'egut', 'Migut.D00656' => 'egut', 'Migut.L00031' => 'egut', 'Migut.N02371' => 'egut', 'Migut.N03122' => 'egut', 'MSTRG.1233' => 'ama', 'MSTRG.12442' => 'ama', 'MSTRG.16834' => 'ama', 'MSTRG.17518' => 'ama', 'MSTRG.18458' => 'ama', 'MSTRG.20057' => 'ama', 'MSTRG.23272' => 'ama', 'MSTRG.24269' => 'ama', 'MSTRG.2500' => 'ama', 'MSTRG.25212' => 'ama', 'Nitab4.5_0000136g0130' => 'nta', 'Nitab4.5_0000352g0060' => 'nta', 'Nitab4.5_0000730g0050' => 'nta', 'Nitab4.5_0001289g0050' => 'nta', 'Nitab4.5_0001317g0170' => 'nta', 'Nitab4.5_0001363g0010' => 'nta', 'Nitab4.5_0001460g0020' => 'nta', 'Nitab4.5_0001500g0080' => 'nta', 'Nitab4.5_0001840g0110' => 'nta', 'Nitab4.5_0002221g0020' => 'nta', 'Nitab4.5_0002266g0010' => 'nta', 'Nitab4.5_0002990g0010' => 'nta', 'Nitab4.5_0003674g0010' => 'nta', 'Nitab4.5_0005128g0030' => 'nta', 'Nitab4.5_0007812g0060' => 'nta', 'Nitab4.5_0010575g0020' => 'nta', 'Nn2g14832' => 'nnu', 'Nn5g29169' => 'nnu', 'Nn6g32192' => 'nnu', 'Nn7g36688' => 'nnu', 'Oeu008571.1' => 'oeu', 'Oeu008572.1' => 'oeu', 'Oeu018116.2' => 'oeu', 'Oeu024030.1' => 'oeu', 'Oeu030401.1' => 'oeu', 'Oeu037717.1' => 'oeu', 'Oeu055745.1' => 'oeu', 'Oeu061710.1' => 'oeu', 'Os01g0954500' => 'osa', 'Os05g0386201' => 'osa', 'Os06g0712600' => 'osa', 'Os08g0547600' => 'osa', 'Os09g0531600' => 'osa', 'Peaxi162Scf00003g00077' => 'pax', 'Peaxi162Scf00004g04521' => 'pax', 'Peaxi162Scf00010g00077' => 'pax', 'Peaxi162Scf00016g00232' => 'pax', 'Peaxi162Scf00084g00135' => 'pax', 'Peaxi162Scf00656g00007' => 'pax', 'Peaxi162Scf00831g00037' => 'pax', 'Peaxi162Scf01079g00216' => 'pax', 'PGR031G1427' => 'pgr', 'PGR031G2446' => 'pgr', 'PGR083G1590' => 'pgr', 'PGR102G0489' => 'pgr', 'PGR119G2466' => 'pgr', 'PGR123G0004' => 'pgr', 'PGR142G0796' => 'pgr', 'PGSC0003DMG400003407' => 'stu', 'PGSC0003DMG400003616' => 'stu', 'PGSC0003DMG400003761' => 'stu', 'PGSC0003DMG400009453' => 'stu', 'PGSC0003DMG400015516' => 'stu', 'PGSC0003DMG400022540' => 'stu', 'PGSC0003DMG400030969' => 'stu', 'Phvul.001G009800' => 'pvu', 'Phvul.002G166700' => 'pvu', 'Phvul.003G258100' => 'pvu', 'Phvul.005G026300' => 'pvu', 'Phvul.006G030400' => 'pvu', 'Phvul.008G200700' => 'pvu', 'Phvul.009G004300' => 'pvu', 'Phvul.009G013700' => 'pvu', 'Phvul.011G041200' => 'pvu', 'Phvul.011G206400' => 'pvu', 'Potri.001G027700' => 'ptr', 'Potri.001G276200' => 'ptr', 'Potri.002G028500' => 'ptr', 'Potri.003G196100' => 'ptr', 'Potri.004G160600' => 'ptr', 'Potri.005G118200' => 'ptr', 'Potri.005G234200' => 'ptr', 'Potri.007G017500' => 'ptr', 'Potri.009G070800' => 'ptr', 'Potri.009G121600' => 'ptr', 'Pp3c18_8920' => 'ppa', 'Pp3c21_16440' => 'ppa', 'Prupe.1G371500' => 'ppe', 'Prupe.2G036500' => 'ppe', 'Prupe.4G267200' => 'ppe', 'Prupe.7G163600' => 'ppe', 'Prupe.8G088300' => 'ppe', 'Psat0s133g0120' => 'psa', 'Psat2g157000' => 'psa', 'Psat4g096720' => 'psa', 'Psat4g191720' => 'psa', 'Psat5g014640' => 'psa', 'Psat5g222400' => 'psa', 'Psat6g005600' => 'psa', 'PSO170G0907' => 'pso', 'PSO210G3541' => 'pso', 'PSO339G5707' => 'pso', 'PSO384G0374' => 'pso', 'PSO541G2701' => 'pso', 'PSO675G4425' => 'pso', 'QL01p017342' => 'qlo', 'QL02p010571' => 'qlo', 'QL04p015067' => 'qlo', 'QL04p015560' => 'qlo', 'QL06p034582' => 'qlo', 'QL11p045553' => 'qlo', 'RcHm_v2.0_Chr1g0324311' => 'rch', 'RcHm_v2.0_Chr2g0100271' => 'rch', 'RcHm_v2.0_Chr5g0050641' => 'rch', 'RcHm_v2.0_Chr6g0266901' => 'rch', 'RcHm_v2.0_Chr6g0302041' => 'rch', 'Rhsim07G0244300' => 'rsi', 'Rhsim08G0124000' => 'rsi', 'Rhsim10G0214700' => 'rsi', 'Rhsim13G0210800' => 'rsi', 'Sabra01G0020100' => 'sbr', 'Sabra02G0022600' => 'sbr', 'Sabra03G0146200' => 'sbr', 'Sabra04G0107400' => 'sbr', 'Sabra05G0097200' => 'sbr', 'Sabra05G0180500' => 'sbr', 'Sabra07G0014900' => 'sbr', 'Sabra09G0053600' => 'sbr', 'Sabra09G0093900' => 'sbr', 'SalBow3G3200' => 'sbo', 'SalBow5G0528' => 'sbo', 'SalBow6G3286' => 'sbo', 'SalBow7G3053' => 'sbo', 'SalBow8G3048' => 'sbo', 'SalBow8G3865' => 'sbo', 'Sc03g0003310' => 'sci', 'Sc08g0000750' => 'sci', 'Sc09g0001000' => 'sci', 'Sc15g0007240' => 'sci', 'Sc16g0002390' => 'sci', 'Sc16g0011090' => 'sci', 'Sc18g0005210' => 'sci', 'Sc26g0003290' => 'sci', 'Sed0001560' => 'sed', 'Sed0001986' => 'sed', 'Sed0002186' => 'sed', 'Sed0003066' => 'sed', 'Sed0008670' => 'sed', 'Sed0009988' => 'sed', 'Sed0011373' => 'sed', 'Sed0012125' => 'sed', 'Sed0014670' => 'sed', 'Sed0020931' => 'sed', 'Sed0027776' => 'sed', 'SEGI_12291' => 'sgi', 'SGA_v2.0_scaffold11G05857' => 'sas', 'SGA_v2.0_scaffold162G37920' => 'sas', 'SGA_v2.0_scaffold201G41325' => 'sas', 'SGA_v2.0_scaffold280G46850' => 'sas', 'SGA_v2.0_scaffold326G48743' => 'sas', 'SGA_v2.0_scaffold3G01449' => 'sas', 'SGA_v2.0_scaffold47G17656' => 'sas', 'SGA_v2.0_scaffold58G20486' => 'sas', 'SGA_v2.0_scaffold8G04548' => 'sas', 'SHI08111' => 'shi', 'SHI08593' => 'shi', 'SHI33910' => 'shi', 'SMO118G0328' => 'smo', 'SMO137G0218' => 'smo', 'SMO144G0112' => 'smo', 'SMO165G0041' => 'smo', 'Solyc02g062400.3' => 'sly', 'Solyc02g084680.3' => 'sly', 'Solyc03g033680.1' => 'sly', 'Solyc04g080970.4' => 'sly', 'Solyc10g054070.1' => 'sly', 'Solyc11g064800.3' => 'sly', 'Sopen01g052300' => 'spe', 'Sopen02g013400' => 'spe', 'Sopen02g029350' => 'spe', 'Sopen03g006470' => 'spe', 'Sopen04g034580' => 'spe', 'Sopen11g024510' => 'spe', 'Sp1g17600' => 'spa', 'Sp2g30370' => 'spa', 'Sp3g31560' => 'spa', 'Sp4g00580' => 'spa', 'Sp5g07990' => 'spa', 'Sp5g11150' => 'spa', 'Sp5g30650' => 'spa', 'Sp6g31310' => 'spa', 'Sp7g34000' => 'spa', 'TAR369G0644' => 'tar', 'TAR376G0411' => 'tar', 'TAR381G1719' => 'tar', 'TAR623G0316' => 'tar', 'TAR623G1210' => 'tar', 'TAR625G1372' => 'tar', 'TAR628G0913' => 'tar', 'THA.LOC104799121' => 'tha', 'THA.LOC104804251' => 'tha', 'THA.LOC104804537' => 'tha', 'THA.LOC104811401' => 'tha', 'THA.LOC104813807' => 'tha', 'THA.LOC104819766' => 'tha', 'THA.LOC104821312' => 'tha', 'THA.LOC104824195' => 'tha', 'THA.LOC104826631' => 'tha', 'Thecc.01G025100' => 'tca', 'Thecc.02G078600' => 'tca', 'Thecc.08G036500' => 'tca', 'Thecc.09G249500' => 'tca', 'Thecc.10G154200' => 'tca', 'Thhalv10004509m.g' => 'esa', 'Thhalv10009634m.g' => 'esa', 'Thhalv10010460m.g' => 'esa', 'Thhalv10010750m.g' => 'esa', 'Thhalv10014142m.g' => 'esa', 'Thhalv10019655m.g' => 'esa', 'Thhalv10022837m.g' => 'esa', 'Thhalv10025845m.g' => 'esa', 'TPR.G12366' => 'tpr', 'TPR.G1469' => 'tpr', 'TPR.G19361' => 'tpr', 'TPR.G2408' => 'tpr', 'TPR.G30480' => 'tpr', 'TPR.G30501' => 'tpr', 'TPR.G33370' => 'tpr', 'TPR.G36023' => 'tpr', 'TWI09G0659' => 'twi', 'TWI15G0263' => 'twi', 'TWI36G0504' => 'twi', 'TWI38G1742' => 'twi', 'TWI53G1955' => 'twi', 'TWI56G1419' => 'twi', 'TWI63G1299' => 'twi', 'TWI73G0664' => 'twi', 'TWI75G1059' => 'twi', 'TWI75G1771' => 'twi', 'TWI79G1686' => 'twi', 'unitig_21.g20799' => 'ugi', 'unitig_22.g6193' => 'ugi', 'unitig_32.g11822' => 'ugi', 'unitig_37.g12823' => 'ugi', 'unitig_46.g17945' => 'ugi', 'unitig_46.g18509' => 'ugi', 'unitig_736.g22637' => 'ugi', 'unitig_748.g8670' => 'ugi', 'unitig_8.g2990' => 'ugi', 'unitig_899.g14631' => 'ugi', 'unitig_899.g14632' => 'ugi', 'unitig_899.g14986' => 'ugi', 'vmacro04024' => 'vma', 'vmacro04319' => 'vma', 'vmacro17446' => 'vma', 'vmacro17733' => 'vma', 'VMungo0006G0001' => 'vmu', 'VMungo0251G2569' => 'vmu', 'VMungo0540G0402' => 'vmu', 'VMungo0647G0330' => 'vmu', 'VMungo0647G0839' => 'vmu', 'VMungo1127G0440' => 'vmu', 'VMungo1215G2159' => 'vmu', 'VMungo1309G0812' => 'vmu', 'VMungo1309G1130' => 'vmu', 'Zm00001eb040220' => 'zma', 'Zm00001eb103460' => 'zma', 'Zm00001eb202660' => 'zma', 'Zm00001eb227800' => 'zma', 'Zm00001eb272500' => 'zma', 'Zm00001eb287060' => 'zma', 'Zm00001eb319530' => 'zma', 'Zm00001eb319580' => 'zma', 'Zm00001eb347090' => 'zma', 'Zm00001eb362740' => 'zma' ) $gf_id = 'HOM05D000711' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000711' ) $data_identifier = 'HOM05D000711' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 11, 'ach' => (int) 11, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 28, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 19, 'bra' => (int) 16, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 8, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 20, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 12, 'lonja' => (int) 6, 'lja' => (int) 9, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 11, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 6, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 1, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 9, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 12, 'vma' => (int) 4, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb362740' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1